IQ-TREE multicore version 2.0.3 for Linux 64-bit built Apr 26 2020
Developed by Bui Quang Minh, Nguyen Lam Tung, Olga Chernomor,
Heiko Schmidt, Dominik Schrempf, Michael Woodhams.

Host:    cn34 (AVX2, FMA3, 125 GB RAM)
Command: /home/smg655/.conda/envs/iqtree/bin/iqtree -t All_Species_m2_AllMapped_edited.nwk -s All_Species_m2_lnc_RNA.nexus --scf 100 --prefix concord_lnc_RNA_ref -T 2
Seed:    139290 (Using SPRNG - Scalable Parallel Random Number Generator)
Time:    Mon May  3 11:57:42 2021
Kernel:  AVX+FMA - 2 threads (2 CPU cores detected)

Reading alignment file All_Species_m2_lnc_RNA.nexus ... Nexus format detected
Alignment has 26 sequences with 52205 columns, 27868 distinct patterns
51654 parsimony-informative, 0 singleton sites, 551 constant sites
        Gap/Ambiguity  Composition  p-value
   1  ActMar    1.72%    failed      3.65%
   2  AldGig    1.64%    failed      0.71%
   3  ApaSpi    2.93%    passed     89.26%
   4  BatTri   49.83%    failed      1.93%
   5  CarIns   10.35%    failed      0.01%
   6  CheAbi    6.58%    failed      0.45%
   7  CheMyd    0.79%    failed      4.25%
   8  CheSer    3.35%    passed     11.54%
   9  ChrPic    0.38%    passed     19.62%
  10  CuoAmb    2.21%    failed      0.66%
  11  CuoMcc    0.75%    failed      0.30%
  12  DerCor    1.59%    failed      3.06%
  13  DerMaw    2.22%    passed     99.80%
  14  EmyOrb   42.19%    failed      0.08%
  15  EmySub    2.02%    passed      7.17%
  16  GopAga    0.89%    failed      3.35%
  17  MalTer    7.26%    passed     34.18%
  18  MauRee    0.54%    failed      0.49%
  19  MesTub    3.48%    passed     18.88%
  20  PelCas    5.28%    failed      0.00%
  21  PelSin    3.52%    passed     83.30%
  22  PlaMeg    0.73%    passed      5.05%
  23  PodExp   12.13%    failed      0.00%
  24  SteCar    3.08%    passed     84.96%
  25  TerCar    1.79%    failed      2.01%
  26  TraScr    0.76%    passed     27.94%
****  TOTAL     6.46%  15 sequences failed composition chi2 test (p-value<5%; df=3)
Reading tree All_Species_m2_AllMapped_edited.nwk ...
un-rooted tree with 26 taxa and 49 branches
Computing site concordance factor...
0.451 sec
Tree with concordance factors written to concord_lnc_RNA_ref.cf.tree
Annotated tree (best viewed in FigTree) written to concord_lnc_RNA_ref.cf.tree.nex
Tree with branch IDs written to concord_lnc_RNA_ref.cf.branch
Concordance factors per branch printed to concord_lnc_RNA_ref.cf.stat
Date and Time: Mon May  3 11:57:43 2021
